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- This list of freshwater fish recorded in Japan is primarily based on the IUCN Red List, which, for fish found in inland waters, details the conservation status of some two hundred and sixty-one species, seventy-three of them endemic. Of these, one is assessed as extinct in the wild (the endemic Black kokanee), seven as critically endangered (the Sakhalin sturgeon, Chinese sturgeon, Sakhalin taimen, and endemic , Kissing loach, Cave goby, and ), twenty as endangered, twelve as vulnerable, ten as near threatened, one hundred and seventy-nine as of least concern, and thirty-two as data deficient. This total includes species such as the Immaculate puffer, which, according to the IUCN Red List, may be characterized as a "marine species which occurs in estuaries...but is not dependent on these systems". According to statistics accompanying the 2020 Japanese Ministry of the Environment (MoE) Red List, and the 2014 Red Data Book, approximately four hundred species and subspecies of freshwater fish and brackish water fish are to be found, but the conservation status of only two hundred and forty-five is detailed. Of these, three taxa are extinct from a domestic perspective (the Green sturgeon, , and endemic ), one extinct in the wild (the endemic Black kokanee), seventy-one critically endangered, fifty-four endangered, forty-four vulnerable, thirty-five near threatened, and thirty-seven data deficient. As of January 2021, for their protection, ten species and subspecies have been designated National Endangered Species by Cabinet Order in accordance with the 1992 Act on Conservation of Endangered Species of Wild Fauna and Flora. A 2017 study, drawing on the 2013 edition of Fishes of Japan (日本産魚類検索), edited by , and the 2001 edition of Freshwater Fishes of Japan (日本の淡水魚), edited by , and including only those that "largely spend their lives in freshwater or diadromous fishes that reproduce in freshwater", but excluding those of the Ryūkyū Islands, lists some one hundred and eighty-one taxa, thirty-one of which, though they may have an established Japanese name and be written about at some length, are yet to be formally described, and as yet have no scientific binomial or trinomial. As for the inland water fishes of the Ryūkyūs, a 2014 checklist detailed some 678 species, in 110 families, and 27 orders, but of these, 334 are primarily marine species "but accidentally migrate to inland waters", with a further 229 estuarine species (143 residential, 86 peripheral), 59 species being fluvial, and 56 diadromous. In addition, it is noted that most of the fluvial species on Okinawa Island are alien. A 1998 study, drawing on earlier editions of the above works by Nakabo and Kawanabe, lists 211 taxa nationwide, in 35 families, and 15 orders, comprising 134 fluvial and lacustrine fishes (63%) and 77 diadromous fishes (37%), including 88 endemics (41%) and 23 exotics (11%). As of the 7 July 2021 update, Eschmeyer's Catalog of Fishes returns three hundred and forty species records for freshwater fishes of Japan, excluding synonyms unless valid as a subspecies, and four hundred and thirty-two brackish water fishes, one hundred and ninety-two records representing those found in both systems, one hundred and fifty-six of which are also found in marine environments. Other than the lampreys with which the list begins, which are jawless fish, all orders are within the clade Actinopterygii, ray-finned fishes. (en)
- この項では、日本の淡水魚について記す。一時的淡水魚も含めるが、河川河口域まではいるものにする。干潟やマングローブ林などの汽水域も含む。外来種、変種、雑種も含む。種の下の位（亜種、変種）がある場合は、その種は含まない。和名は一般的なものにする。 (ja)
- 日本約有近600種的淡水、汽水(半海水)魚類；其中外來種約有50種，原生種則有約550種。分布於河口的魚類仍需要更詳盡的調查，估計可能將現有的種類倍增，即1000種以上的種類存在。 (zh)
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- この項では、日本の淡水魚について記す。一時的淡水魚も含めるが、河川河口域まではいるものにする。干潟やマングローブ林などの汽水域も含む。外来種、変種、雑種も含む。種の下の位（亜種、変種）がある場合は、その種は含まない。和名は一般的なものにする。 (ja)
- 日本約有近600種的淡水、汽水(半海水)魚類；其中外來種約有50種，原生種則有約550種。分布於河口的魚類仍需要更詳盡的調查，估計可能將現有的種類倍增，即1000種以上的種類存在。 (zh)
- This list of freshwater fish recorded in Japan is primarily based on the IUCN Red List, which, for fish found in inland waters, details the conservation status of some two hundred and sixty-one species, seventy-three of them endemic. Of these, one is assessed as extinct in the wild (the endemic Black kokanee), seven as critically endangered (the Sakhalin sturgeon, Chinese sturgeon, Sakhalin taimen, and endemic , Kissing loach, Cave goby, and ), twenty as endangered, twelve as vulnerable, ten as near threatened, one hundred and seventy-nine as of least concern, and thirty-two as data deficient. This total includes species such as the Immaculate puffer, which, according to the IUCN Red List, may be characterized as a "marine species which occurs in estuaries...but is not dependent on these s (en)
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