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- Secret is sent to confront the evil scientific criminology master Hi-Spy face-to-face in France, but Secret cannot outsmart him. (en)
- Secret and Morocco are assigned to recover a missile stolen by the enemy agent Scuba Duba before he can destroy the city, which is being held for ransom by him. (en)
- Hi-Spy is intent on causing destruction on the globe with his armed satellite. Secret and Morocco head to the satellite to halt his plans. (en)
- Secret attempts to stop a crazy giant panda called One Ton from tearing up Chinatown, but he also has strict orders from the Chief not to harm him, because giant pandas are an endangered species. As a result, Secret has to figure out how to defeat the panda without actually fighting him. (en)
- Secret and Morocco are assigned to protect a secret weapon only to lose it to Yellow Pinkie, but they pin him down at the seaport. (en)
- Secret and Morocco have a mission to secure the Bombay Bomb in the Pentagon, whilst the Masked Granny plans a heist to steal it. (en)
- Secret has to stop an opossum named Doctor O. from blocking out the sun with a satellite, but he has to do it blind and in total darkness. The constant darkness also prevents the Chief from using the rest room. (en)
- Yellow Pinkie steals a golden idol and only Secret can locate its whereabouts. (en)
- Secret and Morocco are assigned to safeguard Pasha Panchabaggie, but Pasha rides away on his flying carpet and proves difficult to catch. (en)
- Morocco receives a mandatory special assignment to hold a "rare" and "cursed" egg for at least three seconds, but has a hard time doing so. (en)
- Secret investigates a mysterious candy disappearance caused by a gingerbread man named Greg , who is using ants to steal all the candy in the world, which he will then use to make a giant candy monster. (en)
- Secret must stop an evil shaman goat , who has made a voodoo doll of the Chief in order to gain control over the agency. (en)
- Secret and Morocco are put on a case to recover the Silver Streak Express train, which is stolen by Yellow Pinkie with a shrinking ray gun. (en)
- An evil sea lion named Goldflipper creates a giant gold magnet that steals golden teeth, which he calls the "Molar-Acoustic-Synctro-Bicuspid-Dental-Magnetic-Electro-Platt-Conductive-Postiviser". Secret goes undercover as a Squirrely Girly Scout to thwart Goldflipper's evil plan and recover all the stolen teeth. (en)
- Note: Snooper and Blabber make speaking cameo appearances at a crimefighter's pub. In the same scene, Undercover Elephant from CB Bears, Hong Kong Phooey and Mumbly make background appearances, while the portraits of Scooby-Doo, Ricochet Rabbit & Droop-a-Long, Atom Ant, Hong Kong Phooey, Mumbly and Dynomutt, Dog Wonder are seen with Snooper and Blabber's portraits. (en)
- Secret, Morocco and the Chief get their bodies mixed up in a de-scrambler owned by a platypus and have a hard time catching him in their altered states. (en)
- A sub-atomic quark known as Quark is destroying important monuments in order to make an amphitheater out of North America. Secret has to shrink down to sub-atomic size in order to stop him. (en)
- Secret receives orders from Scotland Yard to recover the stolen crown jewels. He does, but is himself accused of being the thief by the police. (en)
- Secret and Morocco try to find a missing elephant that was taken prisoner by the Grand Wazir to overthrow the Rajah. (en)
- Yellow Pinkie is promoted to President, due to a mass robotic brainwashing of the citizens. Secret and Morocco head to Yellow Pinkie's lab to confront him, but he turns Morocco against Secret. (en)
- Secret and Morocco try to track down some thieves who are using a Robin Hood television show to cover their thefts. (en)
- Secret and Morocco battle Yellow Pinkie in his new Pink Sky Mobile against their Spy Car. Both of them end up with scooting vehicles. (en)
- Secret receives a mission from England to retrieve Big Ben, stolen by a giant who wants to make a cuckoo clock out of it. (en)
- Queen Bea and her honey bee minions capture Secret during a Honey Bank robbery so that Queen Bea can force Secret's hand in marriage after trapping Morocco in a honey container. Penny comes to his rescue. (en)
- Dr. Dangit creates five robot duplicates of Secret Squirrel to commit crimes and frame the real one for them. Secret follows the duplicates to Dangit's hideout and turns them against him. (en)
- While vacationing in Washington D.C., Secret and Morocco chase after Yellow Pinkie, who has stolen gold bullion from the Granbovian embassy. (en)
- In an attempt to cut down his expenses, the Chief replaces Secret with Penny and hires Morocco as his secretary. (en)
- During a race against a race car driving rooster named Hot Rodney , Secret is waylaid by Hot Rodney's orchestrated kidnapping of Morocco. (en)
- Secret and Morocco try to catch Yellow Pinkie, who has stolen all the gold from the mint, but will have to chase him in a car race first. (en)
- Secret and Morocco are sent to catch an enemy agent called Yellow Pinkie, who seems to be too smart for them. (en)
- Secret and Morocco are assigned to locate Hi-Spy's invisible ship and put his plan out of action. (en)
- Secret and Morocco investigate the petrified population of Okey Dokey Isle, where they encounter the responsible perpetrator, Double-Ex. (en)
- In a quiz show hosted by a fox, Secret relates the origin of his partnership with Morocco and an encounter with Morocco's evil twin brother Scirocco . (en)
- Secret and Morocco are assigned to locate a vanished atomic submarine in the hands of Captain Ahab. (en)
- Upon being called in by a scientist, Secret and Morocco attempt to catch what seems to be a cat containing explosive atoms inside it. Unfortunately, a cat-chasing dog makes their task difficult. (en)
- Morocco takes the liberty of locating a gold shipment stolen by Yellow Pinkie all by himself. Secret discreetly assists Morocco during his vacation. (en)
- Note: Yogi Bear and Boo-Boo and the Big Dog and the Little Dog make cameo appearances as the other contestants. (en)
- Secret and Morocco go aboard a Spanish galleon to investigate the ghost of Captain Kidd, who is actually Yellow Pinkie seeking gold. (en)
- Expensive paintings are stolen on the night of a museum gala. Secret discovers an art-loving, sophisticated chameleon has pilfered all the art for his own personal collection. Secret and Morocco then outsmart him by trapping him in a room full of "modern" art, which Chameleon despises. (en)
- Secret and Morocco are sent to safeguard the king's crown, only for it to be stolen by Yellow Pinkie. Secret thwarts every one of his enemy's traps in order to recover the king's crown. (en)
- Secret and Morocco are sent to stop Wily Wolf from smuggling sheep. Secret lures him into a trap with a Little Red Riding Hood scenario. (en)
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