About: SPAdes (software)

An Entity of Type: software, from Named Graph: http://dbpedia.org, within Data Space: dbpedia.org

SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. Therefore, it might not be suitable for large genomes projects. SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads.SPAdes has been integrated into Galaxy pipelines by Guy Lionel and Philip Mabon.

Property	Value
dbo:abstract	SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. Therefore, it might not be suitable for large genomes projects. SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads.SPAdes has been integrated into Galaxy pipelines by Guy Lionel and Philip Mabon. (en)
dbo:developer	dbr:University_of_California,_San_Diego dbr:Saint_Petersburg_State_University dbr:Saint_Petersburg_Academic_University
dbo:genre	dbr:Bioinformatics
dbo:latestReleaseDate	2021-03-08 (xsd:date)
dbo:latestReleaseVersion	3.15.2
dbo:thumbnail	wiki-commons:Special:FilePath/Coverage2.jpg?width=300
dbo:wikiPageExternalLink	http://cab.spbu.ru/software/spades/
dbo:wikiPageID	40693593 (xsd:integer)
dbo:wikiPageLength	19292 (xsd:nonNegativeInteger)
dbo:wikiPageRevisionID	1123484174 (xsd:integer)
dbo:wikiPageWikiLink	dbr:MALBAC dbr:De_Bruijn_graph dbr:Algorithm dbr:Human_Microbiome_Project dbr:DNA dbr:University_of_California,_San_Diego dbr:Velvet_assembler dbr:Polymerase_chain_reaction dbr:List_of_sequence_alignment_software dbr:Iterative dbc:Bioinformatics_software dbr:Saint_Petersburg_State_University dbr:Genetic_diversity dbr:Genome dbr:Saint_Petersburg_Academic_University dbr:Galaxy_(computational_biology) dbr:Antibiotics dbr:Bacterial dbr:K-mer dbr:Sequencing dbc:DNA_sequencing dbr:Edge_(graph_theory) dbr:Escherichia_coli dbr:Oxford_Nanopore_Technologies dbr:Read_(biology) dbc:Metagenomics_software dbr:Chimera_(genetics) dbr:Bioinformatics dbr:Illumina_(company) dbc:Bioinformatics_algorithms dbr:Assembler_(bioinformatics) dbr:Multiple_displacement_amplification dbr:N50,_L50,_and_related_statistics dbr:Ion_Torrent dbr:SMRT_sequencing dbr:Mate-pair dbr:Vertice dbr:File:Coverage2.jpg
dbp:developer	St. Petersburg Academic University, Russia (en) St. Petersburg State University, Russia (en) University of California, San Diego, USA (en)
dbp:genre	dbr:Bioinformatics
dbp:latestReleaseDate	2021-03-08 (xsd:date)
dbp:latestReleaseVersion	3.150000 (xsd:double)
dbp:license	free use (en)
dbp:name	SPAdes (en)
dbp:operatingSystem	Linux, Mac OS (en)
dbp:website	http://cab.spbu.ru/software/spades/
dbp:wikiPageUsesTemplate	dbt:Infobox_software dbt:Reflist dbt:Use_mdy_dates
dcterms:subject	dbc:Bioinformatics_software dbc:DNA_sequencing dbc:Metagenomics_software dbc:Bioinformatics_algorithms
gold:hypernym	dbr:Algorithm
rdf:type	owl:Thing dbo:Software schema:CreativeWork dbo:Work wikidata:Q386724 wikidata:Q7397 yago:WikicatBioinformaticsAlgorithms yago:Abstraction100002137 yago:Act100030358 yago:Activity100407535 yago:Algorithm105847438 yago:Code106355894 yago:CodingSystem106353757 yago:Communication100033020 yago:Event100029378 yago:Procedure101023820 yago:PsychologicalFeature100023100 yago:Writing106359877 yago:WrittenCommunication106349220 yago:YagoPermanentlyLocatedEntity yago:Rule105846932 yago:Software106566077
rdfs:comment	SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. Therefore, it might not be suitable for large genomes projects. SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads.SPAdes has been integrated into Galaxy pipelines by Guy Lionel and Philip Mabon. (en)
rdfs:label	SPAdes (software) (en)
owl:sameAs	freebase:SPAdes (software) wikidata:SPAdes (software) https://global.dbpedia.org/id/chd6 yago-res:SPAdes (software)
prov:wasDerivedFrom	wikipedia-en:SPAdes_(software)?oldid=1123484174&ns=0
foaf:depiction	wiki-commons:Special:FilePath/Coverage2.jpg
foaf:homepage	http://cab.spbu.ru/software/spades/
foaf:isPrimaryTopicOf	wikipedia-en:SPAdes_(software)
foaf:name	SPAdes (en)
is dbo:wikiPageDisambiguates of	dbr:Spade_(disambiguation)
is dbo:wikiPageRedirects of	dbr:SPAdes
is dbo:wikiPageWikiLink of	dbr:SPAdes dbr:Velvet_assembler dbr:De_novo_sequence_assemblers dbr:Genome_skimming dbr:Sequence_assembly dbr:Spade_(disambiguation) dbr:Scaffolding_(bioinformatics)
is foaf:primaryTopic of	wikipedia-en:SPAdes_(software)