About: Genome skimming

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Genome skimming is a sequencing approach that uses low-pass, shallow sequencing of a genome (up to 5%), to generate fragments of DNA, known as genome skims. These genome skims contain information about the high-copy fraction of the genome. The high-copy fraction of the genome consists of the ribosomal DNA, plastid genome (plastome), mitochondrial genome (mitogenome), and nuclear repeats such as microsatellites and transposable elements. It employs high-throughput, next generation sequencing technology to generate these skims. Although these skims are merely 'the tip of the genomic iceberg', phylogenomic analysis of them can still provide insights on evolutionary history and biodiversity at a lower cost and larger scale than traditional methods. Due to the small amount of DNA required for g

Attributes	Values
rdfs:label	Genome skimming (en)
rdfs:comment	Genome skimming is a sequencing approach that uses low-pass, shallow sequencing of a genome (up to 5%), to generate fragments of DNA, known as genome skims. These genome skims contain information about the high-copy fraction of the genome. The high-copy fraction of the genome consists of the ribosomal DNA, plastid genome (plastome), mitochondrial genome (mitogenome), and nuclear repeats such as microsatellites and transposable elements. It employs high-throughput, next generation sequencing technology to generate these skims. Although these skims are merely 'the tip of the genomic iceberg', phylogenomic analysis of them can still provide insights on evolutionary history and biodiversity at a lower cost and larger scale than traditional methods. Due to the small amount of DNA required for g (en)
foaf:depiction
dcterms:subject	Genomics DNA sequencing methods
Wikipage page ID	63210668 (xsd:integer)
Wikipage revision ID	1107768956 (xsd:integer)
Link from a Wikipage to another Wikipage	Bayesian inference in phylogeny Endosymbiont Biodiversity De Bruijn graph Alignment-free sequence analysis Ribosomal DNA DNA annotation DNA barcoding DNA extraction Internal transcribed spacer Sequence alignment Library (biology) List of phylogenetics software List of sequenced plastomes 16S rRNA (guanine1405-N7)-methyltransferase Genomics Maximum likelihood estimation Genetic variation Genome Genus Chloroplast DNA Computational phylogenetics Sequence assembly Pathogen SPAdes (software) Transposable element Oligonucleotide synthesis Hash function Molecular marker NADH2 dehydrogenase (ubiquinone) DNA sequencing methods DNA sequencing Ecology Eukaryote Forensic science Hash table Taxonomy (biology) Coverage (genetics) Effector (biology) List of herbaria Homologous recombination Jaccard index Mitochondrial DNA Phylogenetic tree Phylogenetic tree Evolutionary history of life Sequence homology Maximum parsimony (phylogenetics) Multiple sequence alignment Microsatellite Single-nucleotide polymorphism Sequence analysis Plastid Phylogenomics Non-Mendelian inheritance Dideoxynucleotide 12S rRNA
Link from a Wikipage to an external page	https://www.geneious.com
sameAs	Genome skimming Genome skimming
dbp:wikiPageUsesTemplate	dbt:Col-begin dbt:Col-break dbt:Col-end dbt:Columns-list dbt:Reflist dbt:Short_description dbt:Genetics
thumbnail	wiki-commons:Special:FilePath/Genome_Skimming.png?width=300
has abstract	Genome skimming is a sequencing approach that uses low-pass, shallow sequencing of a genome (up to 5%), to generate fragments of DNA, known as genome skims. These genome skims contain information about the high-copy fraction of the genome. The high-copy fraction of the genome consists of the ribosomal DNA, plastid genome (plastome), mitochondrial genome (mitogenome), and nuclear repeats such as microsatellites and transposable elements. It employs high-throughput, next generation sequencing technology to generate these skims. Although these skims are merely 'the tip of the genomic iceberg', phylogenomic analysis of them can still provide insights on evolutionary history and biodiversity at a lower cost and larger scale than traditional methods. Due to the small amount of DNA required for genome skimming, its methodology can be applied in other fields other than genomics. Tasks like this include determining the traceability of products in the food industry, enforcing international regulations regarding biodiversity and biological resources, and forensics. (en)
prov:wasDerivedFrom	wikipedia-en:Genome_skimming?oldid=1107768956&ns=0
page length (characters) of wiki page	42092 (xsd:nonNegativeInteger)
foaf:isPrimaryTopicOf	wikipedia-en:Genome_skimming
is Link from a Wikipage to another Wikipage of	Alignment-free sequence analysis List of sequenced plastomes Genome skims
is Wikipage redirect of	Genome skims
is foaf:primaryTopic of	wikipedia-en:Genome_skimming

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