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About:
SNV calling from NGS data
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http://faculty.washington.edu/browning/beagle/beagle.html
http://mathgen.stats.ox.ac.uk/impute/impute_v2.html
http://128.32.118.212/thorfinn/realSFS
http://bdgenomics.org/projects/avocado/
http://compbio.bccrc.ca/software/snvmix
http://gmt.genome.wustl.edu/somatic-sniper
http://reveel.stanford.edu/
http://soap.genomics.org.cn/index.html
https://gatk.broadinstitute.org/
https://magnolia.sh/
https://sourceforge.net/p/ngsep/wiki/Home/
http://www.htslib.org/
https://www.rdm.ox.ac.uk/research/lunter-group/lunter-group/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data
http://genome.sph.umich.edu/wiki/Thunder
http://compbio.bccrc.ca/software/jointsnvmix
http://varscan.sourceforge.net
https://github.com/AstraZeneca-NGS/VarDict
https://github.com/Illumina/Pisces
https://github.com/Illumina/strelka
https://github.com/bioinform/neusomatic
https://github.com/bioinform/somaticseq
https://github.com/ekg/freebayes
https://github.com/google/deepvariant
https://github.com/skandlab/VarNet
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