About: SAM (file format)

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Sequence Alignment Map (SAM) is a text-based format originally for storing biological sequences aligned to a reference sequence developed by Heng Li and Bob Handsaker et al. It was developed when the 1000 Genomes Project wanted to move away from the MAQ mapper format and decided to design a new format. The overall TAB-delimited flavour of the format came from an earlier format inspired by BLAT’s PSL. The name of SAM came from Gabor Marth from University of Utah, who originally had a format under the same name but with a different syntax more similar to a BLAST output. It is widely used for storing data, such as nucleotide sequences, generated by next generation sequencing technologies, and the standard has been broadened to include unmapped sequences. The format supports short and long rea

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  • El Format SAM,Sequence Alignment/Mapping Format, és un format delimitat per tabuladors que conté una capçalera i una secció d'alineaments de Seqüències d'ADN curtes com a resultat de programes com a BWA, Bowtie, GenMapper. (ca)
  • Sequence Alignment Map (SAM) is a text-based format originally for storing biological sequences aligned to a reference sequence developed by Heng Li and Bob Handsaker et al. It was developed when the 1000 Genomes Project wanted to move away from the MAQ mapper format and decided to design a new format. The overall TAB-delimited flavour of the format came from an earlier format inspired by BLAT’s PSL. The name of SAM came from Gabor Marth from University of Utah, who originally had a format under the same name but with a different syntax more similar to a BLAST output. It is widely used for storing data, such as nucleotide sequences, generated by next generation sequencing technologies, and the standard has been broadened to include unmapped sequences. The format supports short and long reads (up to 128 Mbp) produced by different sequencing platforms and is used to hold mapped data within the and across the Broad Institute, the Wellcome Sanger Institute, and throughout the 1000 Genomes Project. (en)
  • Le format de cartographie d'alignement de séquence, en anglais sequence alignment map (SAM) est un format texte permettant de stocker des séquences biologiques alignées sur une séquence de référence développé par Heng Li et Bob Handsaker et al. Il est largement utilisé pour stocker des données telles que séquences de nucléotides générées par les technologies de séquençage de nouvelle génération. Le format prend en charge les lectures (en anglais reads) courts et longs (jusqu'à 128 Mbit/s) produit(e)s par différentes plates-formes de séquençage et est utilisé pour conserver des données alignées dans le cadre du Genome Analysis Toolkit (GATK) et au sein du Broad Institute, Wellcome Sanger Institute et du projet 1000 Genomes. Ce format peut contenir des qualités d'appel de base ou base-calling, d'alignement et d'autres données. (fr)
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  • 13429 (xsd:nonNegativeInteger)
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  • 1092334262 (xsd:integer)
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dbp:developer
  • 1000 (xsd:integer)
  • (en)
  • Gonçalo Abecasis (en)
  • Heng Li (en)
  • Richard M. Durbin (en)
  • Alec Wysoker (en)
  • Bob Handsaker (en)
  • Gabor Marth (en)
  • Jue Ruan (en)
  • Nils Homer (en)
  • Tim Fennell (en)
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dbp:name
  • SAM file format (en)
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  • El Format SAM,Sequence Alignment/Mapping Format, és un format delimitat per tabuladors que conté una capçalera i una secció d'alineaments de Seqüències d'ADN curtes com a resultat de programes com a BWA, Bowtie, GenMapper. (ca)
  • Sequence Alignment Map (SAM) is a text-based format originally for storing biological sequences aligned to a reference sequence developed by Heng Li and Bob Handsaker et al. It was developed when the 1000 Genomes Project wanted to move away from the MAQ mapper format and decided to design a new format. The overall TAB-delimited flavour of the format came from an earlier format inspired by BLAT’s PSL. The name of SAM came from Gabor Marth from University of Utah, who originally had a format under the same name but with a different syntax more similar to a BLAST output. It is widely used for storing data, such as nucleotide sequences, generated by next generation sequencing technologies, and the standard has been broadened to include unmapped sequences. The format supports short and long rea (en)
  • Le format de cartographie d'alignement de séquence, en anglais sequence alignment map (SAM) est un format texte permettant de stocker des séquences biologiques alignées sur une séquence de référence développé par Heng Li et Bob Handsaker et al. Il est largement utilisé pour stocker des données telles que séquences de nucléotides générées par les technologies de séquençage de nouvelle génération. Le format prend en charge les lectures (en anglais reads) courts et longs (jusqu'à 128 Mbit/s) produit(e)s par différentes plates-formes de séquençage et est utilisé pour conserver des données alignées dans le cadre du Genome Analysis Toolkit (GATK) et au sein du Broad Institute, Wellcome Sanger Institute et du projet 1000 Genomes. Ce format peut contenir des qualités d'appel de base ou base-callin (fr)
rdfs:label
  • Format SAM (ca)
  • SAM (format de fichier) (fr)
  • SAM (file format) (en)
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