AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensivitiy-specificity tradeoff.

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  • AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensivitiy-specificity tradeoff. The program can be used through the [http://baboon.math.berkeley.edu/mavid/ AMAP web server] or as a standalone program which can be installed with the [http://bio.math.berkeley.edu/amap/download/ source code]. (en)
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  • Ariel Schwartz , Lior Pachter (en)
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  • Bioinformatics tool (en)
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  • 2 (xsd:integer)
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  • Open source (en)
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  • AMAP (en)
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  • AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensivitiy-specificity tradeoff. (en)
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  • AMAP (en)
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