About: SPAdes (software)

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SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. Therefore, it might not be suitable for large genomes projects. SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads.SPAdes has been integrated into Galaxy pipelines by Guy Lionel and Philip Mabon.

Attributes	Values
rdf:type	Thing software schema:CreativeWork work wikidata:Q386724 Software yago:WikicatBioinformaticsAlgorithms yago:Abstraction100002137 yago:Act100030358 yago:Activity100407535 yago:Algorithm105847438 yago:Code106355894 yago:CodingSystem106353757 yago:Communication100033020 yago:Event100029378 yago:Procedure101023820 yago:PsychologicalFeature100023100 yago:Writing106359877 yago:WrittenCommunication106349220 yago:YagoPermanentlyLocatedEntity yago:Rule105846932 yago:Software106566077
rdfs:label	SPAdes (software) (en)
rdfs:comment	SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. Therefore, it might not be suitable for large genomes projects. SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads.SPAdes has been integrated into Galaxy pipelines by Guy Lionel and Philip Mabon. (en)
foaf:name	SPAdes (en)
foaf:homepage	http://cab.spbu.ru/software/spades/
name	SPAdes (en)
foaf:depiction
dcterms:subject	Bioinformatics software DNA sequencing Metagenomics software Bioinformatics algorithms
Wikipage page ID	40693593 (xsd:integer)
Wikipage revision ID	1123484174 (xsd:integer)
Link from a Wikipage to another Wikipage	MALBAC De Bruijn graph Algorithm Human Microbiome Project DNA University of California, San Diego Velvet assembler Polymerase chain reaction List of sequence alignment software Iterative Bioinformatics software Saint Petersburg State University Genetic diversity Genome Saint Petersburg Academic University Galaxy (computational biology) Antibiotic Bacterial K-mer Sequencing DNA sequencing Edge (graph theory) Escherichia coli Oxford Nanopore Technologies Read (biology) Metagenomics software Chimera (genetics) Bioinformatics Illumina (company) Bioinformatics algorithms Assembler (bioinformatics) Multiple displacement amplification N50, L50, and related statistics Ion Torrent SMRT sequencing Mate-pair Vertice
Link from a Wikipage to an external page	http://cab.spbu.ru/software/spades/
sameAs	SPAdes (software) SPAdes (software) SPAdes (software) SPAdes (software)
dbp:wikiPageUsesTemplate	dbt:Infobox_software dbt:Reflist dbt:Use_mdy_dates
thumbnail	wiki-commons:Special:FilePath/Coverage2.jpg?width=300
developer	St. Petersburg Academic University, Russia (en) St. Petersburg State University, Russia (en) University of California, San Diego, USA (en)
genre	Bioinformatics
latest release date	2021-03-08 (xsd:date)
latest release version	3.150000 (xsd:double)
license	free use (en)
operating system	Linux, Mac OS (en)
website	http://cab.spbu.ru/software/spades/
has abstract	SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. Therefore, it might not be suitable for large genomes projects. SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads.SPAdes has been integrated into Galaxy pipelines by Guy Lionel and Philip Mabon. (en)
gold:hypernym	Algorithm
prov:wasDerivedFrom	wikipedia-en:SPAdes_(software)?oldid=1123484174&ns=0
page length (characters) of wiki page	19292 (xsd:nonNegativeInteger)
latest release date	2021-03-08 (xsd:date)
latest release version	3.15.2
developer	University of California, San Diego Saint Petersburg State University Saint Petersburg Academic University
genre	Bioinformatics

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