About: Prevotella-2 RNA motif

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The Prevotella-2 RNA motif is a conserved RNA structure that was discovered by bioinformatics.Energetically stable tetraloops often occur in this motif.Prevotella-2 motif RNAs are found in the bacterial genus Prevotella.

Attributes	Values
rdfs:label	Prevotella-2 RNA motif (en)
rdfs:comment	The Prevotella-2 RNA motif is a conserved RNA structure that was discovered by bioinformatics.Energetically stable tetraloops often occur in this motif.Prevotella-2 motif RNAs are found in the bacterial genus Prevotella. (en)
name	Prevotella-2 (en)
foaf:depiction
dcterms:subject	Non-coding RNA
Wikipage page ID	58276326 (xsd:integer)
Wikipage revision ID	1059163776 (xsd:integer)
Link from a Wikipage to another Wikipage	Proton Prevotella Intrinsic termination Genus Gene Bacteria Non-coding RNA RNA Bioinformatics discovery of non-coding RNAs Tetraloop Sodium Cis-regulatory element DNA strand Sequence conservation Bacterial small RNA Secretion Secondary structure
sameAs	Prevotella-2 RNA motif Prevotella-2 RNA motif
dbp:wikiPageUsesTemplate	dbt:Multiple_issues dbt:Orphan dbt:Primary_sources dbt:Reflist dbt:SO dbt:Infobox_rfam
thumbnail	wiki-commons:Special:FilePath/RF03043.svg?width=300
caption	Consensus secondary structure and sequence conservation of Prevotella-2 RNA (en)
symbol	Prevotella-2 (en)
has abstract	The Prevotella-2 RNA motif is a conserved RNA structure that was discovered by bioinformatics.Energetically stable tetraloops often occur in this motif.Prevotella-2 motif RNAs are found in the bacterial genus Prevotella. Nearly all Prevotella-2 RNAs occur upstream of genes that encode sodium/proton antiporters. These data suggest that the RNAs function as cis-regulatory elements. However, one Prevotella-2 RNA is located upstream of a gene encoded on the opposite DNA strand, which would be unlikely for a cis-regulatory function in bacteria. Therefore, it is also possible that Prevotella-2 RNAs are small RNAs that operate in trans. In this model, their association with sodium/proton antiporters would be a coincidence. Most Prevotella-2 RNAs are followed by a Rho-independent transcription terminator. If the RNAs function in cis, these transcript terminators might be a part of the mechanism used to achieve gene regulation. If, on the other hand, Prevotella-2 RNAs correspond to small RNAs, the terminators may simply terminate the transcript containing this non-coding RNA. (en)
Rfam	RF03043 (en)
RNA type	Gene Bacterial small RNA
prov:wasDerivedFrom	wikipedia-en:Prevotella-2_RNA_motif?oldid=1059163776&ns=0
page length (characters) of wiki page	2341 (xsd:nonNegativeInteger)
foaf:isPrimaryTopicOf	wikipedia-en:Prevotella-2_RNA_motif
is foaf:primaryTopic of	wikipedia-en:Prevotella-2_RNA_motif

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