About: List of alignment visualization software

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This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: * Aid general understanding of large-scale DNA or protein alignments * Visualize alignments for figures and publication * Manually edit and curate automatically generated alignments * Analysis in depth

Attributes	Values
rdf:type	eukaryote
rdfs:label	List of alignment visualization software (en)
rdfs:comment	This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: * Aid general understanding of large-scale DNA or protein alignments * Visualize alignments for figures and publication * Manually edit and curate automatically generated alignments * Analysis in depth (en)
dcterms:subject	Visualization (graphics) Lists of bioinformatics software
Wikipage page ID	23453202 (xsd:integer)
Wikipage revision ID	1099962533 (xsd:integer)
Link from a Wikipage to another Wikipage	Protein Data Bank (file format) BioJava Pfam Rfam UniProt Variant Call Format Vim (text editor) Visual Molecular Dynamics EMBOSS Integrated Genome Browser Structural alignment List of sequence alignment software Commercial software Common Public License Clustal Emacs GNU General Public License Gedit GenBank General feature format Molecular Operating Environment Creative Commons license Apache License Less (Unix) MAFFT MUSCLE (alignment software) Stockholm format Sublime Text Common Development and Distribution License Comparison of software for molecular mechanics modeling Pileup format Protein Data Bank Protein Information Resource Public domain BSD licenses UGENE URL AlphaFold Crystallographic Information File DNASTAR European Bioinformatics Institute European Molecular Biology Laboratory FASTA format FASTQ PHYLIP Jalview Tcl EMBL Archaeopteryx (evolutionary tree visualization and analysis) ACE (genomic file format) ARB Project Visualization (graphics) BioNumerics Biological data visualization T-Coffee Product activation Neighbor joining Newick format Nexus file XSLT MIT License Multiple sequence alignment SAM (file format) Creative Commons license Smith–Waterman algorithm European Nucleotide Archive Lists of bioinformatics software FASTA FASTQ format Software license MEGA, Molecular Evolutionary Genetics Analysis Swiss-model dbr:Distributed_Annotation_System UPGMA BAM format Sequence alignment software dbr:Doi:10.7717/peerj.12983 dbr:Hssp dbr:MASE_format
Link from a Wikipage to an external page	http://www.arb-home.de/ http://compbio.berkeley.edu/people/marcin/jevtrace/jevtracev3.12_manual.pdf http://vc.arb-home.de/readonly/trunk/arb_LICENSE.txt http://www.cmpharm.ucsf.edu/~walther/webmol.html http://www.compbio.dundee.ac.uk/~www-jpred/ http://www.nrbsc.org/gfx/genedoc/gdpaf.htm https://www.jalview.org/ https://www.ncbi.nlm.nih.gov/pubmed/26887850 https://www.ncbi.nlm.nih.gov/pubmed/8609628 https://www.jalview.org/jalview-js/ https://bioSyntax.org https://www.lucidalign.com https://github.com/KatyBrown/CIAlign

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