The genus Aplanochytrium is part of the class Labyrinthulomycetes. It is a sister genus of Labyrinthula and thraustochytrids. The major characteristic of all three genera is the production of an extension of the plasma membrane and the ectoplasm called the , but its use is different in each genera. Aplanochytrium cells are not embedded in the ectoplasmic net but can move by gliding on the ectoplasmic threads.
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