About: List of haplotype estimation and genotype imputation software

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This is a list of notable software for haplotype estimation and genotype imputation. Alphabetical order: * AlphaImpute * Beagle * cnF2freq * DAGPHASE * Eagle * fastPHASE * FILLIN (part of TASSEL) * FImpute * findhap * FSFHap (part of TASSEL) * HAPI-UR * IMPUTE2 * LDMIP * LinkImpute * LinkImputeR * MACH * PHASE * PlantImpute * SHAPEIT2 * SHAPEIT3 * SHAPEIT4 * SimWalk2 * SNPHAP * STITCH * WhatsHap

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dbo:abstract	This is a list of notable software for haplotype estimation and genotype imputation. Alphabetical order: * AlphaImpute * Beagle * cnF2freq * DAGPHASE * Eagle * fastPHASE * FILLIN (part of TASSEL) * FImpute * findhap * FSFHap (part of TASSEL) * HAPI-UR * IMPUTE2 * LDMIP * LinkImpute * LinkImputeR * MACH * PHASE * PlantImpute * SHAPEIT2 * SHAPEIT3 * SHAPEIT4 * SimWalk2 * SNPHAP * STITCH * WhatsHap (en)
dbo:wikiPageExternalLink	http://aipl.arsusda.gov/software/findhap/ http://mathgen.stats.ox.ac.uk/impute/impute_v2.html http://stephenslab.uchicago.edu/software.html%23phase http://www.genetics.ucla.edu/software/simwalk http://www.giga.ulg.ac.be/cms/c_20703/fr/unit-of-animal-genomics-software https://alphagenes.roslin.ed.ac.uk/wp/software-2/alphaimpute https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html https://odelaneau.github.io/shapeit4/ https://whatshap.readthedocs.io/en/latest/ https://www-gene.cimr.cam.ac.uk/staff/clayton/software/ https://dx.doi.org/10.1186/1471-2156-13-85 https://dx.doi.org/10.1534/genetics.110.113936 https://dx.doi.org/10.2135/cropsci2014.09.0648 https://dx.doi.org/10.3835/plantgenome2014.05.0023 https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3873-5 http://www.g3journal.org/content/5/11/2383 https://data.broadinstitute.org/alkesgroup/Eagle/ http://www.sph.umich.edu/csg/abecasis/MACH/download/ https://jmarchini.org/shapeit3/ http://www.maizegenetics.net/%23!tassel/c17q9 http://stephenslab.uchicago.edu/software.html%23fastphase http://www.nature.com/doifinder/10.1038/ng.3594 https://code.google.com/p/hapi-ur/ http://www.aps.uoguelph.ca/~msargol/fimpute/ http://faculty.washington.edu/browning/beagle/beagle.html
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rdfs:comment	This is a list of notable software for haplotype estimation and genotype imputation. Alphabetical order: * AlphaImpute * Beagle * cnF2freq * DAGPHASE * Eagle * fastPHASE * FILLIN (part of TASSEL) * FImpute * findhap * FSFHap (part of TASSEL) * HAPI-UR * IMPUTE2 * LDMIP * LinkImpute * LinkImputeR * MACH * PHASE * PlantImpute * SHAPEIT2 * SHAPEIT3 * SHAPEIT4 * SimWalk2 * SNPHAP * STITCH * WhatsHap (en)
rdfs:label	List of haplotype estimation and genotype imputation software (en)
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