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Align-m is a multiple sequence alignment program written by Ivo Van Walle. Align-m has the ability to accomplish the following tasks: * multiple sequence alignment, * include extra information to guide the sequence alignment, * multiple structural alignment, * homology modeling by (iteratively) combining sequence and structure alignment data, * 'filtering' of BLAST or other pairwise alignments, * combining many alignments into one consensus sequence, * multiple genome alignment (can cope with rearrangements).
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