About: List of RNA structure prediction software

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dbo:abstract	This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction. (en)
dbo:wikiPageExternalLink	http://genoviz.sourceforge.net/ http://www.jalview.org/ ftp://selab.janelia.org/pub/software/rsearch/ http://130.235.46.10/ARAGORN/aragorn1.2.28.c http://4sale.bioapps.biozentrum.uni-wuerzburg.de/ http://DECIPHER.codes/ http://EvryRNA.ibisc.univ-evry.fr/ http://bibiserv2.cebitec.uni-bielefeld.de/pkiss%3Fid=pkiss_view_submission http://bibiwsserv.cebitec.uni-bielefeld.de/fold-grammars/ http://bioinformatics.bc.edu/clotelab/RNAiFold2.0/ http://biotech.bmi.ac.cn/ARDesigner http://biowiki.org/XrateSoftware http://bliss.biology.yale.edu/~zasha/ravenna/ http://cbit.snu.ac.kr/~miTarget/ http://ccmbweb.ccv.brown.edu/rnag.html http://compbio.cs.sfu.ca/taverna/pirna/ http://contra.stanford.edu/contrafold/ http://crdd.osdd.net:8081/RISCbinder/ http://cylofold.abcc.ncifcrf.gov/ http://eddylab.org/R-scape/ http://eterna.cmu.edu/web/ http://evol.bio.lmu.de/_statgen/software/phyloqfold/ http://foldalign.ku.dk/software/ http://genome.ku.dk/resources/war/ http://gtfold.sourceforge.net/ http://iimcb.genesilico.pl/comparna/ http://infernal.janelia.org/ http://kinefold.curie.fr/ http://knetfold.abcc.ncifcrf.gov/ http://lowelab.ucsc.edu/tRNAscan-SE/ http://mastr.binf.ku.dk/ http://mfold.rit.albany.edu/%3Fq=mfold http://mint.cent.uw.edu.pl/index.php%3Fstrona=MintRun http://mostafa.ut.ac.ir/corna/erd-cons/ http://murlet.ncrna.org/murlet/murlet.html http://mxscarna.ncrna.org/mxscarna/mxscarna.html http://nupack.org/ http://phmmts.dna.bio.keio.ac.jp/ http://projects.binf.ku.dk/pgardner/bralibase/bralibase2.html http://psb.stanford.edu/psb-online/proceedings/psb10/abstracts/2010_p69.html http://ribomaker.jaramillolab.org/ http://rna-dv.sourceforge.net/ http://rna.eit.hirosaki-u.ac.jp/modena/ http://rna.igmors.u-psud.fr/erpin/ http://rna.informatik.uni-freiburg.de/CopraRNA/ http://rna.informatik.uni-freiburg.de:8080/LocARNA/ http://rna.urmc.rochester.edu/dynalign.html http://rnabiology.ibr-conicet.gov.ar/comtar/ http://rnacomposer.cs.put.poznan.pl/ http://rnacomposer.ibch.poznan.pl/ http://rnamine.ncrna.org/RNAMINE/ http://rth.dk/resources/rilogo http://rtips.dna.bio.keio.ac.jp/ractip/ http://rtools.cbrc.jp/ http://sarse.kvl.dk/ http://scbb.ihbt.res.in/SCBB_dept/Software.php http://selab.janelia.org/software.html http://sparks-lab.org/jaswinder/server/SPOT-RNA/ http://tagc.univ-mrs.fr/erpin/ http://tfold.ibisc.univ-evry.fr:8080/TFold/ http://theory.csail.mit.edu/MSARi http://tiger.dbs.nus.edu.sg/microtar/ http://wilab.inha.ac.kr/pseudoviewer/ http://wingless.cs.washington.edu/htbin-post/unrestricted/CMfinderWeb/CMfinderInput.pl http://www-lmmb.ncifcrf.gov/~bshapiro/software.html http://www.bioinf.uni-freiburg.de/Software/antaRNA/ http://www.bioinf.uni-leipzig.de/~qin/resources/ripalign.tar.gz http://www.biophys.uni-duesseldorf.de/stral/about.php http://www.cbse.ucsc.edu/~jsp/EvoFold/ http://www.major.iric.ca/MC-Pipeline/ http://www.mybiosoftware.com/rna-analysis/12897 http://www.ncrna.org/software/centroidalign http://www.proto.cs.huji.ac.il/mirror/index.php http://www.rna123.com/ http://www.rnasoft.ca/rnadesign_about.html http://www.scarna.org/scarna/ http://www.targetscan.org/ http://www.tcoffee.org/ http://www.viennarna.at/cgi-bin/RNAinverse.cgi https://major.iric.ca/mirbooking/ https://mosslabtools.bb.iastate.edu/scanfold https://sparks-lab.org/downloads/ https://yanglab.nankai.edu.cn/RNAsol/ http://rna.tbi.univie.ac.at/RNApredator2 http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi http://rna.tbi.univie.ac.at/cgi-bin/RNAz.cgi http://rna.tbi.univie.ac.at/cgi-bin/pmcgi.pl http://rna.tbi.univie.ac.at/forna/ http://groups.csail.mit.edu/pag/mirnaminer/ http://personalpages.manchester.ac.uk/staff/sam.griffiths-jones/software/ralee/ http://bioinfo.lifl.fr/RNA/carnac/carnac.php http://bioinfo.lifl.fr/RNA/carnac/index.php http://www.cbs.dtu.dk/cgi-bin/nph-sw_request%3Frnammer http://www.cbs.dtu.dk/services/RNAmmer/ https://rth.dk/resources/foldalign/ https://rth.dk/resources/foldalign/server/index.html https://rth.dk/resources/foldalign/software/index.html http://bio.cs.washington.edu/yzizhen/CMfinder/ http://ndbserver.rutgers.edu/services/ http://bibiserv.techfak.uni-bielefeld.de/download/tools/rnashapes.html http://bibiserv.techfak.uni-bielefeld.de/guugle/ http://bibiserv.techfak.uni-bielefeld.de/pknotsrg/submission.html http://bibiserv.techfak.uni-bielefeld.de/pknotsrg/welcome.html http://bibiserv.techfak.uni-bielefeld.de/rnacast/ http://bibiserv.techfak.uni-bielefeld.de/rnaforester/ http://bibiserv.techfak.uni-bielefeld.de/rnaforester/submission.html http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/ http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html http://bibiserv.techfak.uni-bielefeld.de/rnamovies http://bibiserv.techfak.uni-bielefeld.de/rnashapes/ http://bibiserv.techfak.uni-bielefeld.de/rnashapes/submission.html http://genie.weizmann.ac.il/pubs/mir07/mir07_data.html http://genie.weizmann.ac.il/pubs/mir07/mir07_exe.html http://genie.weizmann.ac.il/pubs/mir07/mir07_prediction.html http://www.bioinfo.rpi.edu/applications/hybrid/download.php http://www.bioinfo.rpi.edu/applications/mfold/ http://www.iet.unipi.it/a.bechini/swispot/ http://www.tbi.univie.ac.at/RNA/ http://www.tbi.univie.ac.at/RNA/switch.html http://www.tbi.univie.ac.at/papers/SUPPLEMENTS/Alifoldz/ http://www.tbi.univie.ac.at/~choener/rnadesign/ http://www.tbi.univie.ac.at/~ivo/RNA/ http://www.tbi.univie.ac.at/~ivo/RNA/PMcomp/ http://www.tbi.univie.ac.at/~wash/RNAz/ https://www.mi.fu-berlin.de/w/LiSA/ http://cm.jefferson.edu/ http://cm.jefferson.edu/rna22v2.0/ http://cm.jefferson.edu/rna22v2/ http://130.235.46.10/ARAGORN/ http://DECIPHER.codes/Downloads.html http://bibiserv2.cebitec.uni-bielefeld.de/palikiss http://bibiserv2.cebitec.uni-bielefeld.de/rnaalishapes http://bioinformatics.bc.edu/clotelab/RNAiFold/ http://bioinformatics.bc.edu/clotelab/RNAiFold2.0/index.php%3Ftab=downloads http://biowiki.org/RNAAlignmentViewers http://biowiki.org/StemLoc http://contra.stanford.edu/contrafold/server.html http://genome.ku.dk/resources/petfold/ http://kinefold.curie.fr/cgi-bin/form.pl http://lowelab.ucsc.edu/snoscan/ http://mostafa.ut.ac.ir/corna/erd-cons/Download.php http://projects.binf.ku.dk/pgardner/bralibase/bralibase1.html http://projects.binf.ku.dk/pgardner/bralibase/bralibase3 http://rna.informatik.uni-freiburg.de/AntaRNA/ http://rna.informatik.uni-freiburg.de/IntaRNA/ http://rna.urmc.rochester.edu/RNAstructure.html http://rna.urmc.rochester.edu/RNAstructureWeb/ http://rtips.dna.bio.keio.ac.jp/ipknot/ http://scbb.ihbt.res.in/2810-12/miReader.php http://scbb.ihbt.res.in/TAREF/programchoice.html http://www-lmmb.ncifcrf.gov/~bshapiro/downloader_v1/register.php http://www.bioinf.uni-freiburg.de/Software/%23CopraRNA-download http://www.bioinf.uni-freiburg.de/Software/%23IntaRNA-download http://www.bioinf.uni-freiburg.de/Software/GraphClust/ http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/ http://www.bioinf.uni-freiburg.de/Software/LocARNA/ http://www.bioinf.uni-freiburg.de/Software/index.html%3Fen%23INFORNA-download http://www.bioinf.uni-leipzig.de/~jana/software/RNAmicro.html http://www.bioinf.uni-leipzig.de/~jana/software/SnoReport.html http://www.biophys.uni-duesseldorf.de/bralibase/ http://www.biophys.uni-duesseldorf.de/stral/advancedForm.php http://www.major.iric.ca/MajorLabEn/MC-Tools.html http://www.ncrna.org/software/mxscarna/download/ http://www.targetscan.org/cgi-bin/targetscan/data_download.cgi%3Fdb=vert_60 http://www.tcoffee.org/Projects_home_page/r_coffee_home_page.html https://major.iric.ca/~poirigui/mirbooking-scan/ https://sparks-lab.org/server/rnasnap2/ http://comparna.amu.edu.pl http://cupidtool.sourceforge.net http://eternabot.org http://herberttsang.org http://iFoldRNA.dokhlab.org http://rna.urmc.rochester.edu http://sfold.wadsworth.org http://varna.lri.fr http://www.rna.it-chiba.ac.jp http://sourceforge.net/projects/barnacle-rna/ http://sourceforge.net/projects/mireader/ http://sourceforge.net/projects/ribomaker/ http://www.ebi.ac.uk/enright/sylamer/ http://www.ebi.ac.uk/enright/sylarray/ https://archive.today/20141014170648/http:/bioinformatics.oxfordjournals.org/content/early/2014/01/08/bioinformatics.btu001.abstract https://github.com/Lattice-Automation/seqfold https://github.com/McGill-CSB/IncaRNAtion https://github.com/ViennaRNA/RNAblueprint https://github.com/fernandomeyer/RaligNAtor https://github.com/fernandomeyer/Structator https://github.com/gtfold/gtfold/ https://github.com/gvalchca/MINT https://github.com/jaswindersingh2/RNAsnap2 https://github.com/jaswindersingh2/SPOT-RNA https://github.com/marcom/dss-opt https://github.com/ml4bio/e2efold https://github.com/moss-lab/ScanFold https://github.com/pkerpedjiev/forna https://github.com/pkerpedjiev/fornac https://github.com/satoken/centroid-rna-package https://github.com/satoken/dafs https://github.com/satoken/ipknot https://github.com/satoken/ractip https://sourceforge.net/projects/weinberg-r2r/ https://web.archive.org/web/20080724163022/http:/pictar.bio.nyu.edu/ https://web.archive.org/web/20100609233409/http:/ural.wustl.edu/~xingxu/RNASampler/ https://web.archive.org/web/20101208180159/http:/diana.cslab.ece.ntua.gr/microT/ https://web.archive.org/web/20120510145232/http:/www.daimi.au.dk/~compbio/rnafold/ http://www.cs.ubc.ca/~irmtraud/simulfold/ http://www.stats.ox.ac.uk/research/genome/software/frnakenstein http://www.cs.bgu.ac.il/~RNAexinv/ http://www.cs.bgu.ac.il/~negevcb/FRUUT/ http://www.cs.bgu.ac.il/~negevcb/FRUUT/code/FRUUT-2.40.jar http://www.cs.bgu.ac.il/~negevcb/contextfold/ http://www.cs.bgu.ac.il/~negevcb/contextfold/ContextFold_1_00.zip https://simtk.org/home/nast https://simtk.org/home/rnatoolbox http://www.jefferson.edu
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rdfs:comment	This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction. (en)
rdfs:label	List of RNA structure prediction software (en)
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