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SnpEff is an open source tool that annotates variants and predicts their effects on genes by using an interval forest approach. This program takes pre-determined variants listed in a data file that contains the nucleotide change and its position and predicts if the variants are deleterious. This program was first created by Pablo Cingolani to predict effects of single nucleotide polymorphisms (SNPs) in Drosophila, and is now widely used at many universities such as Harvard University, UC Berkeley, Stanford University etc. SnpEff has been used for various applications – from personalized medicine at Stanford University, to profiling bacteria. This annotation and prediction software can be compared to ANNOVAR and Variant Effect Predictor, but each use different nomenclatures

Attributes	Values
rdf:type	Thing schema:CreativeWork work wikidata:Q386724 Database dul:InformationObject Biological database
rdfs:label	SnpEff (en)
rdfs:comment	SnpEff is an open source tool that annotates variants and predicts their effects on genes by using an interval forest approach. This program takes pre-determined variants listed in a data file that contains the nucleotide change and its position and predicts if the variants are deleterious. This program was first created by Pablo Cingolani to predict effects of single nucleotide polymorphisms (SNPs) in Drosophila, and is now widely used at many universities such as Harvard University, UC Berkeley, Stanford University etc. SnpEff has been used for various applications – from personalized medicine at Stanford University, to profiling bacteria. This annotation and prediction software can be compared to ANNOVAR and Variant Effect Predictor, but each use different nomenclatures (en)
foaf:homepage	https://pcingola.github.io/SnpEff/
foaf:depiction
dc:description	Tool that annotates variants and predicts their coding effects.
dct:subject	Free software Genetics software
Wikipage page ID	53334247 (xsd:integer)
Wikipage revision ID	1094437944 (xsd:integer)
Link from a Wikipage to another Wikipage	Ensembl Genomes Nucleotide DNA annotation Variant Call Format Tute Genomics Chromosome ANNOVAR Free software Genetics software Reference genome Human genetic variation TXT file
Link from a Wikipage to an external page	https://pcingola.github.io/SnpEff/se_introduction/ https://pcingola.github.io/SnpEff/
sameAs	SnpEff SnpEff
dbp:wikiPageUsesTemplate	dbt:Infobox_biodatabase dbt:Citation_needed dbt:Orphan dbt:Reflist dbt:Short_description dbt:Cite-section dbt:Ad
thumbnail	wiki-commons:Special:FilePath/Usage_pathway_for_SnpEff.png?width=300
author	Pablo Cingolani (en)
description	Tool that annotates variants and predicts their coding effects. (en)
license	open source - LGPLv3 (en)
released	2012 (xsd:integer)
title	SnpEff (en)
url	https://pcingola.github.io/SnpEff/
has abstract	SnpEff is an open source tool that annotates variants and predicts their effects on genes by using an interval forest approach. This program takes pre-determined variants listed in a data file that contains the nucleotide change and its position and predicts if the variants are deleterious. This program was first created by Pablo Cingolani to predict effects of single nucleotide polymorphisms (SNPs) in Drosophila, and is now widely used at many universities such as Harvard University, UC Berkeley, Stanford University etc. SnpEff has been used for various applications – from personalized medicine at Stanford University, to profiling bacteria. This annotation and prediction software can be compared to ANNOVAR and Variant Effect Predictor, but each use different nomenclatures (en)
prov:wasDerivedFrom	wikipedia-en:SnpEff?oldid=1094437944&ns=0
page length (characters) of wiki page	7458 (xsd:nonNegativeInteger)
title	SnpEff (en)
foaf:isPrimaryTopicOf	wikipedia-en:SnpEff
is Link from a Wikipage to another Wikipage of	ANNOVAR
is foaf:primaryTopic of	wikipedia-en:SnpEff

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