The 2012–13 Cypriot Cup for lower divisions was the 5th edition of the Cypriot Cup for lower divisions. A total of 20 clubs entered the competition. It began on 26 October 2011 with the first round and concluded on 3 April 2013 with the final which was held at . THOI Lakatamia won their 1st cup trophy after beating ENAD Polis Chrysochous 1–0 in the final.