The 2006–07 Milwaukee Panthers men's basketball team represented the University of Wisconsin–Milwaukee during the 2006–07 NCAA Division I men's basketball season. The Panthers, led by second-year head coach Rob Jeter, played their home games at the UW–Milwaukee Panther Arena as members of the Horizon League. They finished the season 9-22, 6–10 in Horizon League play to finish in seventh place. They lost in the first round of the Horizon League tournament to University of Illinois Chicago.