About: Sequence Read Archive

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The Sequence Read Archive (SRA, previously known as the Short Read Archive) is a bioinformatics database that provides a public repository for DNA sequencing data, especially the "short reads" generated by high-throughput sequencing, which are typically less than 1,000 base pairs in length. The archive is part of the International Nucleotide Sequence Database Collaboration (INSDC), and run as a collaboration between the NCBI, the European Bioinformatics Institute (EBI), and the DNA Data Bank of Japan (DDBJ).

Attributes	Values
rdf:type	Thing schema:CreativeWork work wikidata:Q386724 Database dul:InformationObject Biological database
rdfs:label	Sequence Read Archive (en)
rdfs:comment	The Sequence Read Archive (SRA, previously known as the Short Read Archive) is a bioinformatics database that provides a public repository for DNA sequencing data, especially the "short reads" generated by high-throughput sequencing, which are typically less than 1,000 base pairs in length. The archive is part of the International Nucleotide Sequence Database Collaboration (INSDC), and run as a collaboration between the NCBI, the European Bioinformatics Institute (EBI), and the DNA Data Bank of Japan (DDBJ). (en)
foaf:homepage	http://trace.ddbj.nig.ac.jp/dra/index_e.html http://www.ebi.ac.uk/ena/ https://www.ncbi.nlm.nih.gov/sra/
foaf:depiction
dc:description	BAM data FASTQ Sequences
dcterms:subject	Genetics in the United Kingdom Science and technology in Cambridgeshire Genetics databases South Cambridgeshire District
Wikipage page ID	31713909 (xsd:integer)
Wikipage revision ID	1064268529 (xsd:integer)
Link from a Wikipage to another Wikipage	List of biological databases Nature Publishing Group Base pairs Human Microbiome Project DNA Data Bank of Japan International Nucleotide Sequence Database Collaboration 1000 Genomes Project Genetics in the United Kingdom Application programming interface Data compression RNA-Seq Science and technology in Cambridgeshire DNA sequencing Database Genetics databases European Bioinformatics Institute File format South Cambridgeshire District Binary Alignment Map Rosalind (education) Human genome Metagenome National Center for Biotechnology Information ChIP-Seq FASTQ format BAM format Open access journals High-throughput sequencing
Link from a Wikipage to an external page	http://trace.ddbj.nig.ac.jp/dra/index_e.html http://trace.ddbj.nig.ac.jp/dra/index_e.shtml http://www.ebi.ac.uk/ena/ http://www.ebi.ac.uk/ena/about/sra_submissions https://www.ncbi.nlm.nih.gov/Traces/sra/ https://www.ncbi.nlm.nih.gov/sra/
sameAs	Sequence Read Archive Sequence Read Archive Sequence Read Archive Sequence Read Archive
dbp:wikiPageUsesTemplate	dbt:Infobox_biodatabase dbt:Reflist
thumbnail	wiki-commons:Special:FilePath/Database.png?width=300
description	FASTQ format BAM format
logo
Organism	all (en)
title	Sequence Read Archive (en)
url	http://www.ebi.ac.uk/ena/ https://www.ncbi.nlm.nih.gov/sra/
Center	European Bioinformatics Institute National Center for Biotechnology Information DNA Data Bank of Japan (en)
has abstract	The Sequence Read Archive (SRA, previously known as the Short Read Archive) is a bioinformatics database that provides a public repository for DNA sequencing data, especially the "short reads" generated by high-throughput sequencing, which are typically less than 1,000 base pairs in length. The archive is part of the International Nucleotide Sequence Database Collaboration (INSDC), and run as a collaboration between the NCBI, the European Bioinformatics Institute (EBI), and the DNA Data Bank of Japan (DDBJ). The archive was established by the National Center for Biotechnology Information (NCBI) in 2007 in order to provide a repository for data produced by RNA-Seq and ChIP-Seq studies as well as large-scale studies including the Human Microbiome Project and the 1000 Genomes Project. Originally called the Short Read Archive, the name was changed in anticipation of future sequencing technologies being able to produce longer sequence reads. The volume of data deposited in the Sequence Read Archive has grown rapidly. As of September 2010, 65% of the SRA was human genomic sequence, with another 16% relating to human metagenome sequence reads. Much of this data was deposited through the 1000 Genomes Project. In June 2011, the data contained within the SRA passed 100 Terabases of DNA in volume. The preferred data format for files submitted to the SRA is the BAM format, which is capable of storing both aligned and unaligned reads. Internally the SRA relies on the NCBI SRA Toolkit, used at all three INSDC member databases, to provide flexible data compression, API access and conversion to other formats such as FASTQ. NCBI announced their plan to close the NCBI SRA in February 2011 due to funding reduction. However, EBI and DDBJ announced that they would continue to support the SRA. In October 2011, NCBI announced continuation of funding for the SRA. Deposition of data in the SRA is mandated by most funding agencies and open access journals. Nature Publishing Group journals require that DNA and RNA sequencing data is made available through the SRA. (en)
gold:hypernym	Database
prov:wasDerivedFrom	wikipedia-en:Sequence_Read_Archive?oldid=1064268529&ns=0
page length (characters) of wiki page	7197 (xsd:nonNegativeInteger)
title	Sequence Read Archive (en)
foaf:isPrimaryTopicOf	wikipedia-en:Sequence_Read_Archive
is Link from a Wikipage to another Wikipage of	List of biological databases Monoraphidium neglectum Investigations into the origin of COVID-19 AMPHORA BioSamples Rosalind (education) Bloom filters in bioinformatics National Database for Autism Research SRA European Nucleotide Archive FASTQ format Transcriptomics technologies Short Read Archive
is Wikipage redirect of	Short Read Archive
is Wikipage disambiguates of	SRA
is foaf:primaryTopic of	wikipedia-en:Sequence_Read_Archive

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