In the field of computational biology, a planted motif search (PMS) also known as a (l, d)-motif search (LDMS) is a method for identifying conserved motifs within a set of nucleic acid or peptide sequences. PMS is known to be NP-complete. The time complexities of most of the planted motif search algorithms depend exponentially on the alphabet size and l. The PMS problem was first introduced by Keich and Pevzner.
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