About: Phylogenetic inference using transcriptomic data

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In molecular phylogenetics, relationships among individuals are determined using character traits, such as DNA, RNA or protein, which may be obtained using a variety of sequencing technologies. High-throughput next-generation sequencing has become a popular technique in transcriptomics, which represent a snapshot of gene expression. In eukaryotes, making phylogenetic inferences using RNA is complicated by alternative splicing, which produces multiple transcripts from a single gene. As such, a variety of approaches may be used to improve phylogenetic inference using transcriptomic data obtained from RNA-Seq and processed using computational phylogenetics.

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rdfs:label	Phylogenetic inference using transcriptomic data (en)
rdfs:comment	In molecular phylogenetics, relationships among individuals are determined using character traits, such as DNA, RNA or protein, which may be obtained using a variety of sequencing technologies. High-throughput next-generation sequencing has become a popular technique in transcriptomics, which represent a snapshot of gene expression. In eukaryotes, making phylogenetic inferences using RNA is complicated by alternative splicing, which produces multiple transcripts from a single gene. As such, a variety of approaches may be used to improve phylogenetic inference using transcriptomic data obtained from RNA-Seq and processed using computational phylogenetics. (en)
dcterms:subject	Computational phylogenetics Genetics techniques
Wikipage page ID	52821211 (xsd:integer)
Wikipage revision ID	1064285884 (xsd:integer)
Link from a Wikipage to another Wikipage	BLAST Proteins Messenger RNA Nucleotide DNA De novo transcriptome assembly Incomplete lineage sorting Sequence alignment List of phylogenetics software List of sequence alignment software List of sequenced eukaryotic genomes Substitution model Protein isoform Gene duplication Gene expression GenBank Gene Molecular phylogenetics OrthoDB OrthoFinder Computational phylogenetics Sequence assembly Protein structure Synonymous substitution Systematics Fusion gene RNA-Seq Sequencing DNA sequencing Alternative splicing Eukaryote Exome List of RNA-Seq bioinformatics tools RNA Computational phylogenetics Genetics techniques Coding region Homology (biology) Translation (biology) Reference genome RefSeq Phylogenetic tree Phylogenetics Sequence homology Multiple sequence alignment Species Eukaryotic transcription Exome sequencing Expressed sequence tag UniGene Transcriptome Transcriptomics technologies Transcriptomes Orthology (biology) Paralogy
Link from a Wikipage to an external page	https://github.com/trinityrnaseq/trinityrnaseq/wiki http://eggnogdb.embl.de http://metaphors.phylomedb.org/ http://multiparanoid.sbc.su.se/ http://orthomcl.org/orthomcl/ http://phylomedb.org/ http://www.1kite.org/ http://www.deep-phylogeny.org/hamstr/ http://www.greenphyl.org/ http://www.orthodb.org/ http://www.treefam.org/ https://web.archive.org/web/20140224164715/http:/nypg.bio.nyu.edu/orthologid/ http://www.ensembl.org/info/genome/compara/ http://www.cbs.dtu.dk/services/RevTrans-2.0/web/ http://www.flyrnai.org/cgi-bin/DRSC_orthologs.pl http://www.pathogenomics.sfu.ca/ortholugedb http://omabrowser.org/ https://sites.google.com/a/ualberta.ca/onekp/ https://www.ncbi.nlm.nih.gov/BLAST/ https://www.ncbi.nlm.nih.gov/homologene http://inparanoid.sbc.su.se/cgi-bin/index.cgi https://www.ncbi.nlm.nih.gov/genbank/ https://www.ncbi.nlm.nih.gov/refseq/
sameAs	Phylogenetic inference using transcriptomic data Phylogenetic inference using transcriptomic data
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has abstract	In molecular phylogenetics, relationships among individuals are determined using character traits, such as DNA, RNA or protein, which may be obtained using a variety of sequencing technologies. High-throughput next-generation sequencing has become a popular technique in transcriptomics, which represent a snapshot of gene expression. In eukaryotes, making phylogenetic inferences using RNA is complicated by alternative splicing, which produces multiple transcripts from a single gene. As such, a variety of approaches may be used to improve phylogenetic inference using transcriptomic data obtained from RNA-Seq and processed using computational phylogenetics. (en)
prov:wasDerivedFrom	wikipedia-en:Phylogenetic_inference_using_transcriptomic_data?oldid=1064285884&ns=0
page length (characters) of wiki page	16185 (xsd:nonNegativeInteger)
foaf:isPrimaryTopicOf	wikipedia-en:Phylogenetic_inference_using_transcriptomic_data
is Link from a Wikipage to another Wikipage of	Molecular phylogenetics Transcriptome
is foaf:primaryTopic of	wikipedia-en:Phylogenetic_inference_using_transcriptomic_data

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