About: Integrated Microbial Genomes System

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The Integrated Microbial Genomes (IMG) system is a genome browsing and annotation platform developed by the U.S. Department of Energy (DOE)-Joint Genome Institute. IMG contains all the draft and complete microbial genomes sequenced by the DOE-JGI integrated with other publicly available genomes (including Archaea, Bacteria, Eukarya, Viruses and Plasmids). IMG provides users a set of tools for comparative analysis of microbial genomes along three dimensions: genes, genomes and functions. Users can select and transfer them in the comparative analysis carts based upon a variety of criteria. IMG also includes a genome annotation pipeline that integrates information from several tools, including KEGG, Pfam, InterPro, and the Gene Ontology, among others. Users can also type or upload their own g

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rdfs:label	Integrated Microbial Genomes System (es) Integrated Microbial Genomes System (en)
rdfs:comment	El Integrated Microbial Genomes (IMG) o Sistema Integrado de Genomas Microbianos en español es un sistema de anotación y búsqueda de genomas desarrollado por el DOE- de EE. UU. El IMG contiene todos los genomas secuenciados (completamente o en curso) por el DOE-JGI junto con otros genomas disponibles públicamente (incluyendo Archaea, Bacteria, Eukarya, virus y plásmidos). El IMG proporciona un conjunto de herramientas para el análisis comparativo de genes, genomas y funciones. Los usuarios pueden también escribir o cargar sus propias anotaciones genómicas (llamadas anotaciones genómicas MyIMG) y el sistema del IMG les permitirá generar archivos en el formato GenBank o EMBL. (es) The Integrated Microbial Genomes (IMG) system is a genome browsing and annotation platform developed by the U.S. Department of Energy (DOE)-Joint Genome Institute. IMG contains all the draft and complete microbial genomes sequenced by the DOE-JGI integrated with other publicly available genomes (including Archaea, Bacteria, Eukarya, Viruses and Plasmids). IMG provides users a set of tools for comparative analysis of microbial genomes along three dimensions: genes, genomes and functions. Users can select and transfer them in the comparative analysis carts based upon a variety of criteria. IMG also includes a genome annotation pipeline that integrates information from several tools, including KEGG, Pfam, InterPro, and the Gene Ontology, among others. Users can also type or upload their own g (en)
foaf:homepage	http://img.jgi.doe.gov
foaf:depiction
dc:description	Integrated microbial genomes database and comparative analysis system
dcterms:subject	Genome projects Pathogen genomics Biological databases
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Link from a Wikipage to another Wikipage	Metagenomics Human Microbiome Project Joint Genome Institute Pfam United States Department of Energy Genome projects Pathogen genomics Genomes OnLine Database Gene Ontology Genomics MicrobesOnline Biological databases KEGG EMBL InterPro Genbank
Link from a Wikipage to an external page	http://img.jgi.doe.gov/ http://arquivo.pt/wayback/20160516145036/http:/cmr.jcvi.org/ https://img.jgi.doe.gov/abc/ https://img.jgi.doe.gov/cgi-bin/vr/main.cgi http://img.jgi.doe.gov/er http://MicrobesOnline.org http://img.jgi.doe.gov http://theSeed.org https://web.archive.org/web/20071229202044/http:/img.jgi.doe.gov/m/ https://www.ncbi.nlm.nih.gov/genomes/lproks.cgi
sameAs	Integrated Microbial Genomes System Integrated Microbial Genomes System Integrated Microbial Genomes System Integrated Microbial Genomes System Integrated Microbial Genomes System
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thumbnail	wiki-commons:Special:FilePath/Integrated_microbial_genomes.jpg?width=300
author	Victor M Markowitz (en)
citation	Markowitz et al. (en)
description	Integrated microbial genomes database and comparative analysis system (en)
logo	Integrated microbial genomes.jpg (en)
logo caption	Genome analysis tools in IMG 2.9 (en)
title	IMG (en)
url	http://img.jgi.doe.gov
has abstract	The Integrated Microbial Genomes (IMG) system is a genome browsing and annotation platform developed by the U.S. Department of Energy (DOE)-Joint Genome Institute. IMG contains all the draft and complete microbial genomes sequenced by the DOE-JGI integrated with other publicly available genomes (including Archaea, Bacteria, Eukarya, Viruses and Plasmids). IMG provides users a set of tools for comparative analysis of microbial genomes along three dimensions: genes, genomes and functions. Users can select and transfer them in the comparative analysis carts based upon a variety of criteria. IMG also includes a genome annotation pipeline that integrates information from several tools, including KEGG, Pfam, InterPro, and the Gene Ontology, among others. Users can also type or upload their own gene annotations (called MyIMG gene annotations) and the IMG system will allow them to generate Genbank or EMBL format files containing these annotations. In successive releases IMG has expanded to include several domain-specific tools. The Integrated Microbial Genomes with Microbiome Samples (IMG/M) system is an extension of the IMG system providing a comparative analysis context of assembled metagenomic data with the publicly available isolate genomes. The Integrated Microbial Genomes- Expert Review (IMG/ER) system provides support to individual scientists or group of scientists for functional annotation and curation of their microbial genomes of interest. Users can submit their annotated genomes (or request the IMG automated annotation pipeline to be applied first) into IMG-ER and proceed with manual curation and comparative analysis in the system, through secure (password protected) access. The IMG-HMP is focused on analysis of genomes related to the Human Microbiome Project (HMP) in the context of all publicly available genomes in IMG. The IMG-ABC system is a system for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery. The IMG-VR system (with the recent updated version IMG/VR v.2.0) is the largest publicly available database for viral genomes and metagenomes. (en) El Integrated Microbial Genomes (IMG) o Sistema Integrado de Genomas Microbianos en español es un sistema de anotación y búsqueda de genomas desarrollado por el DOE- de EE. UU. El IMG contiene todos los genomas secuenciados (completamente o en curso) por el DOE-JGI junto con otros genomas disponibles públicamente (incluyendo Archaea, Bacteria, Eukarya, virus y plásmidos). El IMG proporciona un conjunto de herramientas para el análisis comparativo de genes, genomas y funciones. Los usuarios pueden también escribir o cargar sus propias anotaciones genómicas (llamadas anotaciones genómicas MyIMG) y el sistema del IMG les permitirá generar archivos en el formato GenBank o EMBL. El Integrated Microbial Genomes with Microbiome Samples (IMG/M) es una extensión del sistema IMG que proporciona un contexto de análisis comparativo de los datos metagenómicos con los genomas disponibles públicamente. El Integrated Microbial Genomes-Expert Review (IMG/ER) es un sistema que proporciona a científicos individuales y a grupos herramientas para la anotación funcional y grabación de sus genomas microbianos de interés. Los usuarios pueden enviar sus anotaciones genómicas al IMG-ER a través de accesos seguros (protegidos por contraseñas). (es)
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title	IMG (en)
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is Link from a Wikipage to another Wikipage of	Metagenomics Metallosphaera hakonensis Methanosarcina Human Microbiome Project Joint Genome Institute Anaplasma Genomes OnLine Database Nitrobacter vulgaris Ralstonia Archaea Longhurst code Francisella tularensis MicrobesOnline Brucella Nikos Kyrpides Euryarchaeota Bifidobacterium Sulfolobus Arthrobacter Borrelia mayonii Microbiota Buchnera aphidicola

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