The 1999–2000 Albanian National Championship was the 61st season of the Albanian National Championship, the top professional league for association football clubs, since its establishment in 1930. The season began on 18 September 1999 and concluded on 7 June 2000. Tirana began the season as defending champions 1998–99 season and Shqiponja was the only team promoted from the Kategoria e Dytë as the league was reduced from 16 teams to 14.