The 1939 Michigan State Spartans football team represented Michigan State College as an independent during the 1939 college football season. In their seventh season under head coach Charlie Bachman, the Spartans compiled a 4–4–1 record and lost their annual rivalry game with Michigan by a 26 to 13 score. In inter-sectional play, the team defeated Syracuse (14–2) and Temple (18–7) and lost to Santa Clara (6–0).