The 1998–99 season was Reading's 128th year in existence and first season back in the Second Division, since the 1993–94 season, and covers the period from 1 July 1998 to 30 June 1999. Reading finished the season in 11th position, were knocked out of the FA Cup at the First Round by Stoke City, the Football League Cup by Barnsley in the Second Round and the First Round of the Football League Trophy by Bournemouth. It was the club's first full season with Tommy Burns as manager, and their first at their new Madejski Stadium.