About: SQ2397

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SQ2397 is an element of RNA that was identified by RNA deep sequencing of Clostridioides difficile 630 where it is located immediately upstream of an uncharacterized transcriptional regulator. Homologs are found widely across Bacillota, consistently located 5’ of transcriptional regulators of similar size and sequence, which strongly supports a cis-regulatory function. This RNA is referred to as CD630_SQ2397. The sequence is highly conserved and shows no evidence for covariation as per . The proposed secondary structure is therefore purely hypothetical.

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dbo:abstract
  • SQ2397 is an element of RNA that was identified by RNA deep sequencing of Clostridioides difficile 630 where it is located immediately upstream of an uncharacterized transcriptional regulator. Homologs are found widely across Bacillota, consistently located 5’ of transcriptional regulators of similar size and sequence, which strongly supports a cis-regulatory function. This RNA is referred to as CD630_SQ2397. The sequence is highly conserved and shows no evidence for covariation as per . The proposed secondary structure is therefore purely hypothetical. (en)
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  • 65263195 (xsd:integer)
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  • 1735 (xsd:nonNegativeInteger)
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  • 1093295099 (xsd:integer)
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dbp:caption
  • Consensus secondary structure and sequence conservation of Cis-regulator of HTH transcription factor (en)
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  • XXXX (en)
dbp:name
  • SQ2397 (en)
  • SQ2397 cis regulatory RNA (en)
dbp:rfam
  • RF03532 (en)
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dbp:symbol
  • SQ2397 (en)
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  • SQ2397 is an element of RNA that was identified by RNA deep sequencing of Clostridioides difficile 630 where it is located immediately upstream of an uncharacterized transcriptional regulator. Homologs are found widely across Bacillota, consistently located 5’ of transcriptional regulators of similar size and sequence, which strongly supports a cis-regulatory function. This RNA is referred to as CD630_SQ2397. The sequence is highly conserved and shows no evidence for covariation as per . The proposed secondary structure is therefore purely hypothetical. (en)
rdfs:label
  • SQ2397 (en)
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