About: SNV calling from NGS data

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SNV calling from NGS data is any of a range of methods for identifying the existence of single nucleotide variants (SNVs) from the results of next generation sequencing (NGS) experiments. These are computational techniques, and are in contrast to special experimental methods based on known population-wide single nucleotide polymorphisms (see SNP genotyping). Due to the increasing abundance of NGS data, these techniques are becoming increasingly popular for performing SNP genotyping, with a wide variety of algorithms designed for specific experimental designs and applications. In addition to the usual application domain of SNP genotyping, these techniques have been successfully adapted to identify rare SNPs within a population, as well as detecting somatic SNVs within an individual using mu

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rdfs:label	SNV calling from NGS data (en)
rdfs:comment	SNV calling from NGS data is any of a range of methods for identifying the existence of single nucleotide variants (SNVs) from the results of next generation sequencing (NGS) experiments. These are computational techniques, and are in contrast to special experimental methods based on known population-wide single nucleotide polymorphisms (see SNP genotyping). Due to the increasing abundance of NGS data, these techniques are becoming increasingly popular for performing SNP genotyping, with a wide variety of algorithms designed for specific experimental designs and applications. In addition to the usual application domain of SNP genotyping, these techniques have been successfully adapted to identify rare SNPs within a population, as well as detecting somatic SNVs within an individual using mu (en)
foaf:depiction
dcterms:subject	DNA sequencing Genetics techniques
Wikipage page ID	40710975 (xsd:integer)
Wikipage revision ID	1123507319 (xsd:integer)
Link from a Wikipage to another Wikipage	Cancer Mutation Variant Call Format International HapMap Project Polymerase chain reaction 1000 Genomes Project SNP annotation Genetic mutation Machine learning Sequence assembly Phred quality score Linkage disequilibrium Locus (genetics) DNA sequencing Bayes theorem Binomial Distribution Germline Coverage (genetics) Genetics techniques Heuristic (computer science) Somatic (biology) Metabolic pathways Maximum a posteriori estimation Somatic cell SNP genotyping Next generation sequencing Haplotypes Hardy–Weinberg equilibrium Gene regulatory networks Single nucleotide polymorphisms Single nucleotide variant
Link from a Wikipage to an external page	http://mathgen.stats.ox.ac.uk/impute/impute_v2.html http://128.32.118.212/thorfinn/realSFS http://bdgenomics.org/projects/avocado/ http://compbio.bccrc.ca/software/snvmix http://gmt.genome.wustl.edu/somatic-sniper http://reveel.stanford.edu/ http://soap.genomics.org.cn/index.html https://gatk.broadinstitute.org/ https://magnolia.sh/ https://sourceforge.net/p/ngsep/wiki/Home/ https://www.rdm.ox.ac.uk/research/lunter-group/lunter-group/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data http://genome.sph.umich.edu/wiki/Thunder http://compbio.bccrc.ca/software/jointsnvmix http://www.htslib.org/ http://varscan.sourceforge.net https://github.com/AstraZeneca-NGS/VarDict https://github.com/Illumina/Pisces https://github.com/Illumina/strelka https://github.com/bioinform/neusomatic https://github.com/bioinform/somaticseq https://github.com/ekg/freebayes https://github.com/google/deepvariant https://github.com/skandlab/VarNet http://faculty.washington.edu/browning/beagle/beagle.html
sameAs	SNV calling from NGS data SNV calling from NGS data SNV calling from NGS data
dbp:wikiPageUsesTemplate	dbt:Reflist
thumbnail	wiki-commons:Special:FilePath/Heterozygous_SNV_call,_from_aligned_NGS_reads.png?width=300
has abstract	SNV calling from NGS data is any of a range of methods for identifying the existence of single nucleotide variants (SNVs) from the results of next generation sequencing (NGS) experiments. These are computational techniques, and are in contrast to special experimental methods based on known population-wide single nucleotide polymorphisms (see SNP genotyping). Due to the increasing abundance of NGS data, these techniques are becoming increasingly popular for performing SNP genotyping, with a wide variety of algorithms designed for specific experimental designs and applications. In addition to the usual application domain of SNP genotyping, these techniques have been successfully adapted to identify rare SNPs within a population, as well as detecting somatic SNVs within an individual using multiple tissue samples. (en)
prov:wasDerivedFrom	wikipedia-en:SNV_calling_from_NGS_data?oldid=1123507319&ns=0
page length (characters) of wiki page	23509 (xsd:nonNegativeInteger)
foaf:isPrimaryTopicOf	wikipedia-en:SNV_calling_from_NGS_data
is Link from a Wikipage to another Wikipage of	SNV calling from sequencing data John G. Cleary ANNOVAR Cancer genome sequencing Single-nucleotide polymorphism Variant calling
is Wikipage redirect of	SNV calling from sequencing data Variant calling
is foaf:primaryTopic of	wikipedia-en:SNV_calling_from_NGS_data

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