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About: BEAST 2     Goto   Sponge   NotDistinct   Permalink

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BEAST 2 is a cross-platform program for Bayesian analysis of molecular sequences. It estimates rooted, timed phylogenies using a range of substitution and clock models, and a variety of tree priors. There is an associated tool, called BEAUTi, for setting up standard analyses (which are specified using XML). BEAST 2 is a complete re-write of the earlier (still actively developed) BEAST program and as such draws on a large body of work. A notable feature of BEAST 2 is the packaging system which has simplified the process of implementing novel models.