@prefix rdf: . @prefix dbpedia: . @prefix ns2: . dbpedia:T-Coffee rdf:type ns2:ComputationalPhylogenetics , ns2:Bioinformatics . @prefix dbpedia-owl: . dbpedia:T-Coffee rdf:type dbpedia-owl:Software , dbpedia-owl:Work . @prefix owl: . dbpedia:T-Coffee rdf:type owl:Thing . @prefix foaf: . dbpedia:T-Coffee foaf:homepage . @prefix dbpprop: . dbpedia:T-Coffee dbpprop:name "T-Coffee"@en ; owl:sameAs . @prefix ns7: . dbpedia:T-Coffee owl:sameAs ns7:T-Coffee ; foaf:name "T-Coffee" . @prefix ns8: . dbpedia:T-Coffee foaf:page ns8:T-Coffee ; dbpprop:reference , , , , . @prefix rdfs: . dbpedia:T-Coffee rdfs:label "T-Coffee"@en , "T-Coffee"@es ; dbpedia-owl:developer dbpedia:CRG ; dbpprop:abstract "T-Coffee (del ingl\u00E9s Tree-based Consistency Objective Function For alignment Evaluation, funci\u00F3n objetivo de coherencia basada en \u00E1rbol para evaluaci\u00F3n de alineamientos) es un software para el alineamiento m\u00FAltiple de secuencias que utiliza un enfoque progresivo. Genera una biblioteca de alineamientos de pares para guiar el alineamiento m\u00FAltiple de secuencias. Puede combinar, tambi\u00E9n, alineamientos m\u00FAltiples obtenidos previamente y, en las \u00FAltimas versiones, puede usar informaci\u00F3n estructural de archivos PDB (3D-Coffee). Tiene caracter\u00EDsticas avanzadas para evaluar la calidad de los alineamientos, as\u00ED como algunas capacidades para identificar la ocurrencia de motivos (Mocca). Por defecto, el alineamiento lo produce en el formato \"aln\" de Clustal, aunque tambi\u00E9n puede generar formatos PIR, MSF y FASTA. Los ficheros de entrada siempre est\u00E1n bajo el formato FASTA. N\u00F3tese que lo que T-Coffee denomina formato \"Clustal\" es lo bastante diferente del formato de salida de ClustalW/X como para que muchos programas que soportan el formato de Clustal no puedan leerlo; afortunadamente, ClustalX puede importar salidas de T-Coffee, por lo que un sencilla soluci\u00F3n para este punto en cuesti\u00F3n es importar la salida de T-Coffee en ClustalX y re-exportarla."@es , "T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to guide the multiple sequence alignment. It can also combine multiple sequences alignments obtained previously and in the latest versions can use structural information from PDB files (3D-Coffee). It has advanced features to evaluate the quality of the alignments and some capacity for identifying occurrence of motifs (Mocca). It produces alignment in the aln format by default, but can also produce PIR, MSF and FASTA format. The most common input formats are supported. While the default output is a Clustal-like format, it is sufficiently different from the output of ClustalW/X that many programs supporting Clustal format cannot read it; fortunately ClustalX can import T-Coffee output so the simplest fix for this issue is usually to import T-Coffee's output into ClustalX and then re-export. Another possibility is to request the strict Clustalw output format with the option \"-output=clustalw_aln\" An important specificity of T-Coffee is its ability to combine different methods and different data types. In its latest version, T-Coffee can be used to combine protein sequences and structures, RNA sequences and structures. It can also run and combine the output of the most common sequence and structure alignment packages. For a complete list see: tclinkdb. txt T-Coffee comes along with a sophisticated sequence reformatting utility named seq_reformat. An extensive documentation is available from t_coffee_technical. htm along with a tutorial t_coffee_tutorial. htm"@en ; rdfs:comment "T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach. It generates a library of pairwise alignments to guide the multiple sequence alignment. It can also combine multiple sequences alignments obtained previously and in the latest versions can use structural information from PDB files (3D-Coffee)."@en , "T-Coffee (del ingl\u00E9s Tree-based Consistency Objective Function For alignment Evaluation, funci\u00F3n objetivo de coherencia basada en \u00E1rbol para evaluaci\u00F3n de alineamientos) es un software para el alineamiento m\u00FAltiple de secuencias que utiliza un enfoque progresivo. Genera una biblioteca de alineamientos de pares para guiar el alineamiento m\u00FAltiple de secuencias."@es . @prefix ns10: . dbpedia:T-Coffee ns10:developer dbpedia:CRG . @prefix skos: . @prefix ns12: . dbpedia:T-Coffee skos:subject ns12:Bioinformatics_software , ns12:Computational_phylogenetics , ns12:Bioinformatics . @prefix ns13: . dbpedia:T-Coffee dbpprop:wikiPageUsesTemplate ns13:infobox_software ; dbpprop:latestReleaseVersion 8.06 ; dbpprop:genre "Bioinformatics tool"@en ; dbpprop:developer "C\u00E9dric Notredame, CRG Centro de Regulacio Genomica - Barcelona"@en ; dbpprop:operatingSystem dbpedia:UNIX , dbpedia:MS-Windows , dbpedia:Linux ; dbpprop:website ; dbpprop:licence dbpedia:GNU_General_Public_License . @prefix ns14: . dbpedia:T-Coffee dbpprop:latestReleaseDate ns14:release_date_and_age . @prefix ns15: . dbpedia:T-Coffee dbpprop:hasPhotoCollection ns15:T-Coffee . @prefix ns16: . dbpedia:T-Coffee dbpprop:wordnet_type ns16:synset-software-noun-1 . @prefix yago: . yago:T-Coffee owl:sameAs dbpedia:T-Coffee .